Created by
Shodhaka
Contributors
Share your knowledge / experiences
Home |
Other web-portals
Resources
Post-analysis categorization
Literature search
Post-survey categorization
Features validated in most cases
Gene expression
Pathways
Primer designing
Protein-protein interactions (commonly used resources)
Features not validated
DNA motif detection
MicroRNA
Multiple sequence alignment
Next generation sequencing
Simple lists
Gene ID conversion
Promoter prediction
Protein-protein interactions (all resources)
Protein structure prediction
SNP analysis
Under preparation
Alternative splice form analysis
Microarray data analysis
Basic concepts
Broad reviews
Other reviews
Case studies
Comparison of resources
Broad reviews
DNA motif detection
Computational identification of transcriptional regulatory elements in DNA sequence
A survey of motif discovery methods in an integrated framework
How does DNA sequence motif discovery work?
Computer analysis of nucleic acid regulatory
Detecting Cis-Regulatory Modules by Modeling Correlated Structures in Genomic Sequences
Gene expression
An overview of methods for the study of gene expression
Overview on quantitative capabilities of several techniques for measuring gene expression levels
Gene expression databases and data mining
Expectations, validity, and reality in gene expression profiling
MicroRNA
microRNA biogenesis and post transcriptional regulation
Plant microRNA: characteristics, identification and methods of study
Fundamental concepts, progress and recent trends in the study of microRNA
microRNA genomics, function, regulation in plants and animals
Computational tools for microRNA gene and target identification
Regulatory pathways in microRNA processing and its role in cancer
microRNAs and small interfering RNAs
Biogenesis of small RNAs
PAID
Major protein components of microRNA pathway: Dicer, Argonaute, RISC RNA-binding proteins, Exportin
Current tools, strategies and applications of microRNA study from a bioengineering perspective
PAID
Experimental methods for microRNA target identification
Evolution of microRNA genes in plants
The importance of coding regions in post-transcriptional regulation
Experimental strategies for microRNA research
Multiple sequence alignment
Protein multiple sequence alignment
Multiple sequence alignment
An overview of multiple sequence alignment
Multiple sequence alignment (overview)
Next generation sequencing
Solutions to biological problems through sequencing
FREE
A window into third-generation sequencing
FREE
Bioinformatics challenges of new sequencing technology
FREE
Review on applications of NGS
FREE
Statistical analyses of next generation sequence data: A Partial Overview
FREE
Next generation sequencing: applications beyond genomes
FREE
Latest review on resources for NGS
FREE
Uncovering the immunological repertoire through next-generation sequencing
FREE
The power of NGS technologies to delineate the genome organization in cancer: from mutations to structural variations and epigenetic alterations
FREE
Pathways
Bioinformatics applications for pathway analysis of microarray data
Emerging applications of network and pathway analysis in drug discovery and development
Biological pathway construction and analysis
Pathway analysis tools and toxicogenomics reference databases for risk assessment
Pathway and ontology analysis
Wnt pathway in human cancers
Primer designing
PCR primer designing and trouble shooting
General concepts for PCR primer design
Optimization and Troubleshooting in PCR
Recent Advances in the Polymerase Chain Reaction
Sequencing of PCR-amplified DNA
Amplifying DNA with arbitrary oligonucleotide primers
Primer on Medical Genomics. Part II: Background Principles and Methods in Molecular Genetics
Promoter prediction
An introduction to promoters, their types and activities in detail (Downloadable)
The transcriptional initiation process: review (paid article)
PAID
A description on RNA polymerase II core promoter elements (A CSH Press article)
Functional characterization of core promoter elements (An ASM research article)
Compilation and analysis of E.coli promoter DNA sequences (An Oxford Journals article)
PAID
Effects of a polymorphism in the human tumor necrosis factor alpha promoter on transcriptional activation (A PNAS article)
The organization, promoter analysis and expression of the human PPARG gene (A JBC article)
Origin and evolution of CpG islands: a review
A novel method for prokaryotic promoter prediction based on DNA stability (A BMC Bioinformatics article)
Dragon Promoter Finder: recognition of vertebrate RNA polymerase II promoters (An Oxford Journals article)
Promoter2.0: for the recognition of polII promoter sequences (An Oxford Journals article)
Interpolated markov chains for eukaryotic promoter recognition (An Oxford Journals article)
Large scale human promoter mapping using CpG islands
Identification and analysis of eukaryotic promoters: recent computational approaches (A ScienceDirect article)
PAID
Predicting Pol II promoter sequences using transcription factor binding sites (A ScienceDirect article)
PAID
TRED: a Transcriptional Regulatory Element Database and a platform for in silico gene regulation studies (An Oxford Journals article)
The Eukaryotic Promoter Database EPD (An Oxford Journals article)
SCPD: a promoter database of the yeast Saccharomyces cerevisiae (An Oxford Journals article)
MPromDb: an integrated resource for annotation and visualization of mammalian gene promoters and CHIP-chip experimental data (An Oxford Journals article)
PlantProm: a database of plant promoter sequences (An Oxford Journals article)
Promoter Extraction from GenBank (PEG): automatic extraction of eukaryotic promoter sequences in large sets of genes (An Oxford Journals article)
Osteo-Promoter Database (OPD) - Promoter analysis in skeletal cells
Protein-protein interactions
Principles of protein-protein interactions
Protein-protein interactions: in vivo and in vitro detection methods
Protein-protein interactions: detection and analysis methods
Protein-protein interactions: detection and analysis methods
Molecular interactions: models and tools
Protein-protein interaction networks: from interactions to networks
Genome-wide protein interaction maps using two-hybrid systems
Bioinformatics of large-scale protein interaction networks
SNP analysis
Genotyping single nucleotide polymorphisms: a review
Disclaimer
Grow and let grow!
copyright © shodhaka life sciences private limited; all rights reserved
Grow and let grow!