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A compilation and categorization of alternative splicing resources

ASAP II - Alternative Splicing Annotation Project

Tool nameASAP II - Alternative Splicing Annotation Project
URLhttp://bioinfo.mbi.ucla.edu/ASAP2/
Important features
CitationsKim N, Alekseyenko AV, Roy M, Lee C. The ASAP II database: analysis and comparative genomics of alternative splicing in 15 animal species. Nucleic AcIDs Res. 2007 Jan;35(Database issue):D93-8. Epub 2006 Nov 15. PubMed PMID: 17108355; PubMed Central PMCID: PMC1669709.
Year of publication2006
Rank by usage frequency100
Comments1) Gives Genomic expression. 2) Gives Genomic location, gene aliases etc. as gene information. 3) Orthologous genes identified by MULTIZ alignments are given. 4) Isoform sequences are given. 5) Type of exons- Alternative or Constitute are given along with genomic position and number of EST and mRNA observed. 6) Intron type- Alternative or Constitutive, 5 site, 3 site, whether canonical or not and splice type, all information is provided. 7) Alternative Splicing information is provided.
FunctionExon detail: length, Intron detail: length, Graphical display of transcripts, Alignment, Expression information, Gene Information, Finds alternative splicing in human, Finds alternative splicing in mouse, Finds alternative splicing in chicken, Finds alternative splicing in zebrafish, Finds alternative splicing in dog, Finds alternative splicing in cow, Finds alternative splicing in other species
Category
Input file formatGene symbol, Unigene sequence identifier, Unigene Cluster identifier, Gene title, Genbank Sequence Identifier.
Output file formatTabular and graphical format
Limitation

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