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A compilation and categorization of alternative splicing resources

ASMD - Alternative Splicing Mutation Database

Tool nameASMD - Alternative Splicing Mutation Database
URLhttp://mco321125.meduohio.edu/~jbechtel/asmd/1.1/
Important featuresIt is used to check for the mutation that has been caused and the effect that happened because of the mutation. It also gives the type of mutation and the accuracy levels for that mutation.
CitationsBechtel JM, Rajesh P, Ilikchyan I, Deng Y, Mishra PK, Wang Q, Wu X, Afonin KA, Grose WE, Wang Y, Khuder S, Fedorov A. The Alternative Splicing Mutation Database: a hub for investigations of alternative splicing using mutational evIDence. BMC Res Notes. 2008;1:3. Epub 2008 Feb 26. PubMed PMID: 18611286; PubMed Central PMCID: PMC2518265.
Year of publication2008
Rank by usage frequency100
Comments1) ASMD data can be downloaded. 2) Gene information includes Exon number, position of mutation, mutation detail and codon change. 3) Wild type and mutated sequence are given. 4) Effects of mutation along with the number of exons affected, is mentioned.
FunctionExon detail: number, Exon detail: start/end, Exon detail: sequence, Exon detail: length, Exon detail direct information, Intron detail: sequence, Intron detail: length, Types of alternative splice events, Gene Information, CDS details
Category
Input file formatgene, open reading frame (ORF) or cosmid
Output file format
Limitation

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