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A compilation and categorization of alternative splicing resources

ASTRA - Alternative Splicing and TRanscription Archives

Tool nameASTRA - Alternative Splicing and TRanscription Archives
URLhttp://alterna.cbrc.jp/
Important featuresDatabase for identification of patterns of alternative splicing and transcriptional initiation. Exons introns structures of splice variants can be viewed on java applet.
Citations
Year of publicationNot available
Rank by usage frequency100
Comments1) Gene information includes Gene name, chromosome number, strand, position and number of patterns. 2) Sequence of gene can be downloaded. 3) Data of Alternative Splicing can also be downloaded.
FunctionGene Information, Finds alternative splicing in human, Finds alternative splicing in mouse, Finds alternative splicing in Arabidopsis, Finds alternative splicing in Drosophila, Finds alternative splicing in other species
Category
Input file formatSplicing Type, chromosome number, Unigene cluster ID, Genbank accession, Gene Name, OMIM ID, Gene ontology and signature (can be searched using OR and AND options)
Output file format
Limitation

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