Home   |  About Startbioinfo |   Other web-portals 

Categories of resources

Suggested Readings
 
 
A compilation and categorization of alternative splicing resources

AVATAR

Tool nameAVATAR
URLhttp://avatar.iecs.fcu.edu.tw/
Important features
CitationsHsu FR, Chang HY, Lin YL, Tsai YT, Peng HL, Chen YT, Cheng CY, Shih MY, Liu CH, Chen CF. AVATAR: a database for genome-wIDe alternative splicing event detection using large scale ESTs and mRNAs. Bioinformation. 2005 Apr 22;1(1):16-8. PubMed PMID: 17597845; PubMed Central PMCID: PMC1891626.
Year of publication2005
Rank by usage frequency100
CommentsURL not working as on 14 Dec 2012
FunctionFinds alternative splicing in human, Finds alternative splicing in rat, Finds alternative splicing in mouse, Finds alternative splicing in dog, Finds alternative splicing in other species
Category
Input file formatgene names, number of Identified AS events in a gene, minimal number of ESTs supporting a splicing site,accession number, gene isoform, gene location, cytogenetic locations, chromosome number,selecting organism / species
Output file format
Limitation

Grow and let grow!
copyright © shodhaka life sciences private limited; all rights reserved