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A compilation and categorization of alternative splicing resources

AceView

Tool nameAceView
URLhttp://www.ncbi.nlm.nih.gov/IEB/Research/Acembly/index.html
Important features
CitationsThierry-Mieg D, Thierry-Mieg J. AceView: a comprehensive cDNA-supported gene and transcripts annotation. Genome Biol. 2006;7 Suppl 1:S12.1-14. Epub 2006 Aug 7. PubMed PMID: 16925834; PubMed Central PMCID: PMC1810549.
Year of publication2006
Rank by usage frequency100
Comments Compact Gene diagram is shown as an output, which marks the exon length. Number of cDNA's supporting each intron, good proteins, partial or not good proteins are also marked.
FunctionExon detail: number, Exon detail: start/end, Exon detail: sequence, Exon detail: length, Exon detail direct information, Intron detail: start/end, Intron detail: sequence, Intron detail: length, BLAST, Expression information, Finds alternative splicing in human, Finds alternative splicing in rat, Finds alternative splicing in mouse, Finds alternative splicing in Arabidopsis, Finds alternative splicing in other species
Category
Input file format gene or protein name, a LocusLink name or an alias symbol or a LocusID, a clone name, an mRNA or EST sequence accession ,a meaningful expression, a gene ontology term
Output file formatTextual information, along with graphical and tabular format is given.
Limitation

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