Home   |  About Startbioinfo |   Other web-portals 

Categories of resources

Suggested Readings
A compilation and categorization of alternative splicing resources

AgenDA - Alignment based Gene Detection Algorithm

Tool nameAgenDA - Alignment based Gene Detection Algorithm
Important featuresGene prediction tool performing searches for conserved splice sites and start/stop codons. It also identifies potential exons.
CitationsTaher L, Rinner O, Garg S, Sczyrba A, Brudno M, Batzoglou S, Morgenstern B. AGenDA:homology-based gene prediction. Bioinformatics. 2003 Aug 12;19(12):1575-7. PubMed PMID: 12912840.
Year of publication2003
Rank by usage frequency99
Comments1) Results are obtained in e-mail 2) Gene information provides Gene number. 3) Provides information about the reading frame (0,1,2) 4) Gives information about the DNA strand, whether + or -
FunctionExon detail: number, Exon detail: start/end, Exon detail direct information, Predicted protein sequences, Gene Information, Finds alternative splicing in chicken, Finds alternative splicing in other species
Input file formatTwo Fasta Files
Output file format

Grow and let grow!
copyright © shodhaka life sciences private limited; all rights reserved