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A compilation and categorization of alternative splicing resources


Tool nameAgene
Important features
CitationsMunch K, Krogh A. Automatic generation of gene finders for eukaryotic species. BMC Bioinformatics. 2006 May 21;7:263. PubMed PMID: 16712739; PubMed Central PMCID: PMC1522026.
Year of publication2006
Rank by usage frequency100
Comments1) Requires registration. 2) Returns error "Please note that this software is no longer being supported or updated." as on 26th july 2012 3) GeneMachine is available by anonymous FTP at ftp://ftp.nhgri.nih.gov/pub/software/genemachine/.
FunctionFinds alternative splicing in human, Finds alternative splicing in mouse, Finds alternative splicing in Arabidopsis, Finds alternative splicing in Drosophila, Finds alternative splicing in other species
Input file formatSequence in FASTA format
Output file format

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