Home   |  About Startbioinfo |   Other web-portals 

Categories of resources

Suggested Readings
 
 
A compilation and categorization of alternative splicing resources

Alexa-Seq - Alternative Expression Analysis By RNA Sequencing

Tool nameAlexa-Seq - Alternative Expression Analysis By RNA Sequencing
URLhttp://www.alexaplatform.org/alexa_seq/index.htm
Important features
Citations Griffith M, Griffith OL, Mwenifumbo J, Goya R, Morrissy AS, Morin RD, Corbett R, Tang MJ, Hou YC, Pugh TJ, Robertson G, Chittaranjan S, Ally A, Asano JK, Chan SY, Li HI, McDonald H, Teague K, Zhao Y, Zeng T, Delaney A, Hirst M, Morin GB, Jones SJ, Tai IT, Marra MA. Alternative expression analysis by RNA sequencing. Nat Methods. 2010 Oct;7(10):843-7. Epub 2010 Sep 12. PubMed PMID: 20835245.
Year of publication2010
Rank by usage frequency100
Comments1) ALEXA-Seq annotation databases for eight species, raw data, source code, etc. can be downloaded. 2) Gene information includes chromosome number, start, end, strand, size and type of gene.
FunctionExon detail: number, Exon detail direct information, Expression information, Gene Information, Number of transcripts
Category
Input file formatHugo name, Entrez name, Ensembl ID, project ID
Output file format
Limitation

Grow and let grow!
copyright © shodhaka life sciences private limited; all rights reserved