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A compilation and categorization of alternative splicing resources

Astalavista - Alternative splicing transcriptional landscape visualization tool

Tool nameAstalavista - Alternative splicing transcriptional landscape visualization tool
URLhttp://genome.crg.es/astalavista/
Important featuresIdentifies complex Alternative Splice events by comparing all given transcripts.
Citations Foissac S, Sammeth M. ASTALAVISTA: dynamic and flexible analysis of alternative splicing events in custom gene datasets. Nucleic AcIDs Res. 2007 Jul;35(Web Server issue):W297-9. Epub 2007 May 7. PubMed PMID: 17485470; PubMed Central PMCID: PMC1933205.
Year of publication2007
Rank by usage frequency100
Comments1) The results can be browsed on UCSC browser. 2)Results can be downloaded in GTF or ASTA format. 3) Splice site details include the chromosome number, and the position of Alternative Splice sites. 4) Intron- Exon structure is also shown. 5) Types of Alternative Splice Events include exon skipping, alt acceptor and intron retention.
FunctionNumber of splice events, Types of alternative splice events, Display of splice events, Splice site details, Finds alternative splicing in human, Finds alternative splicing in rat, Finds alternative splicing in chicken, Finds alternative splicing in dog, Finds alternative splicing in cow, Finds alternative splicing in Drosophila, Finds alternative splicing in other species
CategoryOnline, Downloadable, Online/ Downloadable
Input file formatGTF annotation or a list of genes/ transcripts/ proteins.
Output file formatGTF or ASTA format
Limitation

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