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A compilation and categorization of alternative splicing resources


Tool nameAugustus
Important features
CitationsStanke M, Keller O, Gunduz I, Hayes A, Waack S, Morgenstern B. AUGUSTUS: ab initio prediction of alternative transcripts. Nucleic AcIDs Res. 2006 Jul 1;34(Web Server issue):W435-9. PubMed PMID: 16845043; PubMed Central PMCID: PMC1538822.
Year of publication2006
Rank by usage frequency99
Comments1) This method allows approximation of the true intron length distribution more accurately than do existing programs. 2) It gives alignment results.These can be downloaded as well. 3) Gives predicted coding sequences.
FunctionFinds alternative splicing in human, Finds alternative splicing in Arabidopsis, Finds alternative splicing in Drosophila, Finds alternative splicing in other species
Input file formatFASTA sequence, cDNA (mRNA or EST) Sequence
Output file format

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