Home   |  About Startbioinfo |   Other web-portals 

Categories of resources

Suggested Readings
 
 
A compilation and categorization of DNA motif detection resources

Amadeus

Tool nameAmadeus
URLhttp://acgt.cs.tau.ac.il/amadeus/
Important featuresThis tool predicts transcription factor binding sites and microRNA motif regions.
CitationsLinhart C, Halperin Y, Shamir R. Transcription factor and microRNA motif discovery: the Amadeus platform and a compendium of metazoan target sets. Genome Res. 2008 Jul;18(7):1180-9. Epub 2008 Apr 14. PubMed PMID: 18411406; PubMed Central PMCID: PMC2493407.
Year of publication2008
Rank by usage frequency100
CommentsDownloadable along with motif file, and it can be downloaded from the given link for prediction of the known motif.
FunctionMotif detection by pattern/matrix input (KNOWN), Motif detection by Background file (KNOWN), Motif detection by promoter/TSS mode (KNOWN)
CategoryDownloadable
PlatformWindows /Linux

Grow and let grow!
copyright © shodhaka life sciences private limited; all rights reserved