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A compilation and categorization of multiple sequence alignment resources

ABA - A-Bruijn Alignment

Tool nameABA - A-Bruijn Alignment
URLhttp://nbcr.sdsc.edu/euler/
Important featuresIts flexibility for aligning the sequences. It is useful in the alignment of genomic sequences containing duplications and inversions.
CitationsRaphael B, Zhi D, Tang H, Pevzner P. A novel method for multiple alignment of sequences with repeated and shuffled elements. Genome Res. 2004 Nov;14(11):2336-46. PubMed PMID: 15520295; PubMed Central PMCID: PMC525693.
Year of publication2004
Rank by usage frequency96
Comments
FunctionProtein
CategoryNeed registration, Free, Downloadable
Online/downloadable
Other detailsShould be installed in linux system, need to register for academic use.
Other features
Other citationsJones NC, Zhi D, Raphael BJ. AliWABA: alignment on the web through an A-Bruijn approach. Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W613-6. PubMed PMID: 16845083; PubMed Central PMCID: PMC1538870.

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