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A compilation and categorization of multiple sequence alignment resources

Align-m

Tool nameAlign-m
URLhttp://bioinformatics.vub.ac.be/software/software.html (download)
Important featuresAlignment can be restricted to columns of high confidence. Extra information can be added to improve the alignment and can be run iteratively.
CitationsVan Walle I, Lasters I, Wyns L. Align-m--a new algorithm for multiple alignment of highly divergent sequences. Bioinformatics. 2004 Jun 12;20(9):1428-35. Epub 2004 Feb 12. PubMed PMID: 14962914.
Year of publication2004
Rank by usage frequency100
CommentsNot suitable for large data. Unaligned sequences will be shown in lower case. Input file should not contain any special character (other than >). The downloadable link is accessible, but could not be installed (as on 04 May 2012).
FunctionDNA, Protein, DNA & Protein
CategoryCould not install, Free, Downloadable
Online/downloadable
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