Home   |  About Startbioinfo |   Other web-portals 

Categories of resources

Suggested Readings
 
 
A compilation and categorization of next-generation sequencing resources

ABMapper

Tool nameABMapper
URLhttp://abmapper.sourceforge.net/
Important features1. Maps RNA-Seq reads to target genome, considering possible multiple mapping locations and splice junctions. 2. Detects exonic alignment. 3. It has overlap parameter.
CitationsLou SK, Ni B, Lo LY, Tsui SK, Chan TF, Leung KS. ABMapper: a suffix array-based tool for multi-location searching and splice-junction mapping. Bioinformatics. 2011 Feb 1;27(3):421-2. Epub 2010 Dec 17. PubMed PMID: 21169377; PubMed Central PMCID: PMC3031031.
Year of publication2011
Rank by usage frequency100
Comments
FunctionRNA seq alignment
CategoryFree, Downloadable
LicenseGPL
Status
Input file formatFASTA, FASTQ, SAM file generated by BWA
Output file format
Operating systemWindows,Linux/Unix, Mac OS X
Operating languageC++, Perl
Platform
Maintained byHong Kong Bioinformatics Center
Downloadable file format
Submission file format

Grow and let grow!
copyright © shodhaka life sciences private limited; all rights reserved