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A compilation and categorization of next-generation sequencing resources

ALEXA-Seq - ALternative EXpression Analysis

Tool nameALEXA-Seq - ALternative EXpression Analysis
Important features1. ALEXA Seq (ALternative EXpression Analysis) is used for next generation paired end RNA sequencing. 2. It is used for quantifying RNA seq reads.
CitationsGriffith M, Griffith OL, Mwenifumbo J, Goya R, Morrissy AS, Morin RD, Corbett R, Tang MJ, Hou YC, Pugh TJ, Robertson G, Chittaranjan S, Ally A, Asano JK, Chan SY, Li HI, McDonald H, Teague K, Zhao Y, Zeng T, Delaney A, Hirst M, Morin GB, Jones SJ, Tai IT, Marra MA. Alternative expression analysis by RNA sequencing. Nat Methods. 2010 Oct;7(10):843-7. Epub 2010 Sep 12. PubMed PMID: 20835245.
Year of publication2010
Rank by usage frequency100
FunctionRNA seq analysis
CategoryFree, Downloadable
Input file format
Output file format
Operating systemLinux, Windows
Operating languagePerl
Maintained by
Downloadable file format
Submission file format

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