Home   |  About Startbioinfo |   Other web-portals 

Categories of resources

Suggested Readings
 
 
A compilation and categorization of next-generation sequencing resources

AMOS - A Modular Open Source whole genome assembler

Tool nameAMOS - A Modular Open Source whole genome assembler
URLhttp://sourceforge.net/apps/mediawiki/amos/index.php?title=AMOS
Important features1. AMOS is a modular, open-source framework for genome assembly research and development, which provides integration between software modules through a centralized data store and a well defined API. 2. It has a comparative assembler, a program that can assemble a set of shotgun reads from an organism by mapping them to the finished sequence of a related organism, comparative assembler for short reads (Solexa, 454).
CitationsTreangen TJ, Sommer DD, Angly FE, Koren S, Pop M. Next Generation Sequence Assembly with AMOS. Curr Protoc Bioinformatics. 2011 Mar;Chapter 11:Unit11.8. PubMed PMID: 21400694.
Year of publication2011
Rank by usage frequency98
Comments
FunctionReference assembler
CategoryFree, Downloadable
LicenseArtistic
Status
Input file formatAMOS message format
Output file format
Operating systemDebian, Ubuntu, Fedora, RedHat, CentOS, Cygwin, Mac OS X
Operating languageC, Perl
PlatformRoche 454, Illumina/Solexa
Maintained by
Downloadable file format
Submission file format

Grow and let grow!
copyright © shodhaka life sciences private limited; all rights reserved