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Suggested Readings
A compilation and categorization of next-generation sequencing resources


Tool nameANNOVAR
Important features1. ANNOVAR annotate genetic variants detected from diverse genomes including human genome hg18/ hg19, as well as mouse, worm, fly, yeast and many other organisms. 2. It can perform Gene-based, region-based and filter-based annotations.
CitationsWang K, Li M, Hakonarson H. ANNOVAR: functional annotation of genetic variants from high throughput sequencing data. Nucleic Acids Res. 2010 Sep;38(16):e164. Epub 2010 Jul 3. PMID:20601685.
Year of publication2010
Rank by usage frequency50
FunctionSNP discovery, Indel discovery
CategoryFree, Downloadable
Input file formattext-based input files, SAMTools pileup format, Illumina export format from GenomeStudio, SOLiD GFF genotype-calling format, Complete Genomics variant format, and VCF format.
Output file format
Operating systemLinux
Operating languagePerl
Maintained byEllen Purpus, director of OTT
Downloadable file format
Submission file format

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