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Categories of resources

Suggested Readings
A compilation and categorization of next-generation sequencing resources

Alta Cyclic

Tool nameAlta Cyclic
Important features1. It is used for accurate and long reads. 2. It provides large amount of useful reads after 78 cycles. 3. 78 base reads improved sequencing output. 4. It allows up to 9 mismatches.
CitationsErlich Y, Mitra PP, delaBastide M, McCombie WR, Hannon GJ. Alta-Cyclic: a self-optimizing base caller for next-generation sequencing. Nat Methods. 2008 Aug;5(8):679-82. Epub 2008 Jul 6. PubMed PMID: 18604217; PubMed Central PMCID: PMC2978646.
Year of publication2008
Rank by usage frequency100
FunctionBase calling
CategoryFree, Downloadable
Input file format
Output file format2bit format
Operating systemLinux
Operating languagePerl and C
Maintained byYaniv Erlich
Downloadable file format
Submission file format

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