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A compilation and categorization of next-generation sequencing resources


Tool nameArrayExpressHTS
Important features1. A tool used for RNA seq data analysis. 2. It estimates expression, RNA seq quality and quantity.
CitationsGoncalves A, Tikhonov A, Brazma A, Kapushesky M. A pipeline for RNA-seq data processing and quality assessment. Bioinformatics. 2011 Mar 15;27(6):867-9. Epub 2011 Jan 13. PubMed PMID: 21233166; PubMed Central PMCID: PMC3051320.
Year of publication2011
Rank by usage frequency96
FunctionRNA seq analysis
CategoryFree, Downloadable
Input file formatFASTQ
Output file format
Operating systemLinux 64 bit
Operating languageR
Maintained byEBI
Downloadable file format
Submission file format

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