Home   |  About Startbioinfo |   Other web-portals 

Categories of resources

Suggested Readings
 
 
A compilation and categorization of next-generation sequencing resources

Atlas-Indel2

Tool nameAtlas-Indel2
URLhttp://www.hgsc.bcm.tmc.edu/cascade-tech-software_atlas_indel2-ti.hgsc
Important features1. Atlas-Indel2 is a suite of indel calling tools based on logistic regression models made up of pertinent variables sequencing data. 2. This branch of Atlas-Indel2 is trained for Illumina and SOLiD Exome Capture data. 3. It also needs SAMtools installed.
Citations
Year of publicationNot available
Rank by usage frequency100
CommentsRequires installation of SAMTools in the path.
FunctionIndel discovery
CategoryFree, Downloadable
License
Status
Input file formatBAM file from GATK local realigner
Output file formatVCF files
Operating systemUnix
Operating language
PlatformIllumina/Solexa and ABI SOLiD
Maintained byBaylor College of Medicine Human Genome Sequencing Center
Downloadable file format
Submission file format

Grow and let grow!
copyright © shodhaka life sciences private limited; all rights reserved