|Tool name||Avadis NGS|
|Important features||1. It is used for data analysis, visualization, and management of data generated by next-generation sequencing (NGS) platforms.
2. It has the following features integrated with the software:
a) Genome browser (visualize sequenced reads on complete genome).
b) Variant support view (which lists the SNPs and small InDels that were detected during SNP analysis).
c) Pathway analysis (how genes interact with each other).
d) Alternative splicing analysis
e) SNP detection
f) BIOBASE genome Trax (can be accessed within Avadis NGS).|
|Year of publication||Not available|
|Rank by usage frequency||96|
|Comments||Free trial version is available for 20 days.|
|Function||Visualization, SNP discovery, Indel discovery, ChIP seq analysis, RNA seq analysis, Software package|
|Input file format||SAM, BAM, FASTQ|
|Output file format|
|Operating system||Windows XP, Windows Vista, Windows 7, Leopard (10.5.x), Snow Leopard (10.6.x), Lion (10.7), Red Hat Enterprise Linux (5.x), and Debian GNU/Linux 5.0 (lenny).
|Platform||Illumina/Solexa, Roche 454, ABI SOLiD, Ion torrent|
|Maintained by||Pathogen Group at the Sanger Institute.
|Downloadable file format|
|Submission file format|