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A compilation and categorization of next-generation sequencing resources

Avadis NGS

Tool nameAvadis NGS
URLhttp://www.avadis-ngs.com/
Important features1. It is used for data analysis, visualization, and management of data generated by next-generation sequencing (NGS) platforms. 2. It has the following features integrated with the software: a) Genome browser (visualize sequenced reads on complete genome). b) Variant support view (which lists the SNPs and small InDels that were detected during SNP analysis). c) Pathway analysis (how genes interact with each other). d) Alternative splicing analysis e) SNP detection f) BIOBASE genome Trax (can be accessed within Avadis NGS).
Citations
Year of publicationNot available
Rank by usage frequency96
CommentsFree trial version is available for 20 days.
FunctionVisualization, SNP discovery, Indel discovery, ChIP seq analysis, RNA seq analysis, Software package
CategoryPaid, Downloadable
License
Status
Input file formatSAM, BAM, FASTQ
Output file format
Operating systemWindows XP, Windows Vista, Windows 7, Leopard (10.5.x), Snow Leopard (10.6.x), Lion (10.7), Red Hat Enterprise Linux (5.x), and Debian GNU/Linux 5.0 (lenny).
Operating languageJava
PlatformIllumina/Solexa, Roche 454, ABI SOLiD, Ion torrent
Maintained byPathogen Group at the Sanger Institute.
Downloadable file format
Submission file format

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