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A comparative account of primer designing resources, feature-validations and application-based categorizations


Tool nameAmplicon
Important features1. Designs group specific PCR primers. 2. Allows the user to select regions that may be group-specific primer binding sites. 3. Amplicon can import aligned DNA sequences produced by ClustalW or ClustalX or aligned sequences in MEGA or fasta format.
CitationsJarman SN. Amplicon: software for designing PCR primers on aligned DNA sequences. Bioinformatics. 2004 Jul 10;20(10):1644-5. Epub 2004 Feb 12. PubMed PMID: 14962918.
Year of publication2004
Rank by usage frequency1
CommentsFeatures are written as claimed by the author. Not validated completely.
CategoryDownloadable, Free
FeaturesDesigns group-specific PCR primer sets that amplify a DNA region from a given taxonomic group but do not amplify orthologous regions from other taxonomic groups.
DescriptionFor relational studies before intra/inter species members [primer design for closely related species].

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