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Created on: 26-Oct-2012   Last updated on: 26-Oct-2012  |  How to cite this?
Total resources - 11
A list of resources for gene ontology specific analysis
Sravanthi Davuluri and Akhilesh Bajpai (Correspondence: Acharya KK, kshitish@ibab.ac.in)

Resources
Short description*Rank by usage frequency Click to Edit / Add comments
MOSAIC - GO network annotation and partition in Cytoscape
http://nrnb.org/tools/mosaic
A Cytoscape plugin for visualizing functional network based on GO terms, and mapping user data such as miRNA onto the network
1
GORILLA - Gene Ontology enRIchment anaLysis and visuaLizAtion tool
http://cbl-gorilla.cs.technion.ac.il
GO enrichment analysis in ranked gene lists
32
BiNGO - A Biological Network Gene Ontology tool
http://www.psb.ugent.be/cbd/papers/BiNGO/
A Cytoscape plugin for visualizing statistically over-represented GO categories
86

Website states that the current version- BINGO 3.0.3 is compatible with Cytoscape 3.0 and above (as on 8 Nov 2016)
QuickGO
http://www.ebi.ac.uk/QuickGO
Quick browser for GO terms with many additional features such as Go filters and GO slim annotations and relationships
86
GOEAST - Gene Ontology Enrichment Analysis Software Toolkit
http://omicslab.genetics.ac.cn/GOEAST
Statistical GO analysis with graphical output and comparative analysis
88
EasyGO - Gene Ontology enrichment analysis tool
http://bioinformatics.cau.edu.cn/easygo
Statistical GO term enrichment with graphical outputs for agronomical species
98

The updated version of EasyGO is available as- agriGO
Catmap
http://bioinfo.thep.lu.se/catmap.html
Comparison of GO annotations and statistical ranking
100
DynGO
http://biocreative.ifsm.umbc.edu/dyngo
Search and browse GO and its association databases
100

URL not working as on 21 Jan 2014 (confirmed on 13 Nov 2016)
GOGrapher
https://projects.dbbe.musc.edu/trac/GOGrapher
GO analysis and network creation using GO terms
100

URL not working as on 16 Feb 2017
Golorize
http://www.pasteur.fr/recherche/unites/Biolsys/Golorize
A Cytoscape plugin for a class-guided network visualization and over-representation analysis of GO categories
100
PiNGO
http://www.psb.ugent.be/esb/PiNGO
A Cytoscape plugin for visualizing and analyzing biological networks of GO categories, including statistical and enrichment analysis
100

The current version of PiNGO is compatible with Cytoscape 2.8
 
Click here for more Gene Ontology analysis tools
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