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Created on: 30-Oct-2012   Last updated on: 30-Oct-2012  |  How to cite this?
Total resources - 37
A list of resources for protein localization
Sravanthi Davuluri and Akhilesh Bajpai (Correspondence: Acharya KK, kshitish@ibab.ac.in)

Resources
Short description*Rank by usage frequency Click to Edit / Add comments
HPA - Human Protein Atlas
http://www.proteinatlas.org
A database for protein level expression profiles in various cell lines and tissues, including subcellular localization
43
LOCATE - subcellular localization database
http://locate.imb.uq.edu.au
A curated database for membrane organization and subcellular localization of human and mouse proteins
50
TargetP
http://www.cbs.dtu.dk/services/TargetP
A tool for predicting the subcellular location of eukaryotic proteins
81
Nucleo - Nuclear Localisation Predictor
http://pprowler.itee.uq.edu.au/Nucleo-Release-1.0
A tool for nuclear protein localization prediction
88

URL not working as on 9 Feb 2015 (confirmed on 15 Nov 2016)
HPRD - Human Protein Reference Database
http://www.hprd.org
A curated database for human protein information including subcellular localization
90
CELLO - subCELlular LOcalization predictor
http://cello.life.nctu.edu.tw
A tool for subcellular localization prediction for bacterial and eukaryotic proteins
96
PSORTdb
http://db.psort.org
A database for subcellular localizations of bacterial and archaeal proteins
98
WoLF PSORT - Protein Subcellular Localization Prediction
http://wolfpsort.org
A tool for protein subcellular localization prediction
98
Gpos-PLoc
http://www.csbio.sjtu.edu.cn/bioinf/Gpos
A tool for predicting subcellular location of Gram-positive bacterial proteins
99
Plant-mPLoc
http://www.csbio.sjtu.edu.cn/bioinf/plant-multi
A tool for predicting plant proteins subcellular localization, including those with multiple sites
99
SUBA - SUBcellular localisation database for Arabidopsis proteins
http://www.suba.bcs.uwa.edu.au
A database for protein subcellular localization in Arabidopsis
99
SubLoc - Prediction of Protein Subcellular Localization
http://www.bioinfo.tsinghua.edu.cn/SubLoc
A tool for protein subcellular localization prediction based on amino acid composition
99

URL not working as on 9 Feb 2015 (confirmed on 15 Nov 2016)
BaCelLo - Balanced Subcellular Localization Predictor
http://gpcr.biocomp.unibo.it/bacello
A tool for predicting the subcellular localization of proteins in eukaryotes
100
Cell-PLoc
http://chou.med.harvard.edu/bioinf/Cell-PLoc
A package of web-servers that predicts subcellular localization of proteins in different species
100
DBSubLoc
http://www.bioinfo.tsinghua.edu.cn/dbsubloc.html
A database for protein subcellular localization annotation
100
eSLDB - Eukaryotic Subcellular Localization DataBase
http://gpcr.biocomp.unibo.it/esldb/
A database of eukaryotic protein subcellular localization annotation
100
Euk-mPLoc
http://www.csbio.sjtu.edu.cn/bioinf/euk-multi-2
A tool for predicting eukaryotic proteins subcellular localization, including those with multiple sites
100
Gneg-PLoc
http://www.csbio.sjtu.edu.cn/bioinf/Gneg
A tool for predicting subcellular location of Gram-negative bacterial proteins
100

Website states that Gneg-PLoc server has been updated to 2.0 version (as on 15 Nov 2016)
Hum-mPLoc
http://www.csbio.sjtu.edu.cn/bioinf/hum-multi
A tool for predicting human proteins subcellular localization, including those with multiple sites
100
LOC3D
http://cubic.bioc.columbia.edu/db/LOC3d
A tool for subcellular localization prediction for eukaryotic proteins of known three-dimensional structure
100

URL not working as on 9 Feb 2015 (confirmed on 15 Nov 2016)
LocDB - Protein Localization Database for Human and Arabidopsis
http://www.rostlab.org/services/locDB/
A curated database for experimental annotations for the subcellular localization of human and Arabidopsis proteins
100
LOCSVMPSI
http://Bioinformatics.ustc.edu.cn/LOCSVMPSI/LOCSVMPSI.php
A server for subcellular localization prediction of eukaryotic proteins using SVM and profile of PSI-BLAST
100

URL not working as on 9 Feb 2015 (confirmed on 15 Nov 2016)
MultiLoc / TargetLoc
http://abi.inf.uni-tuebingen.de/Services/MultiLoc
A tool for protein subcellular localization prediction by integrating phylogeny and Gene Ontology terms
100

Website states that this version of tool is outdated and recommends the use of MultiLoc2 (as on 15 Nov 2016)
NucImport - Nuclear Protein import and localization signals predictor
http://pprowler.itee.uq.edu.au/NucImport
A software for predicting nuclear transport of proteins in mouse and yeast
100

URL not working as on 9 Feb 2015 (confirmed on 15 Nov 2016)
NucPred - Predicting Nuclear Localization of Proteins
http://www.sbc.su.se/~maccallr/nucpred
A tool for protein nuclear localization prediction
100
Organelle DB
http://organelledb.lsi.umich.edu
A resource for eukaryotic protein localization and function
100
PA-SUB - Proteome Analyst Specialized Subcellular Localization Server
http://webdocs.cs.ualberta.ca/~bioinfo/PA/Sub
A server for protein subcellular localization prediction
100
PathLocdb - Pathway Localization database
http://pathloc.cbi.pku.edu.cn
A database for the subcellular localization of metabolic pathways including participating enzymes
100
PredSL - PREDiction of Subcellular Location from the N-terminal Sequence
http://hannibal.biol.uoa.gr/PredSL
A tool that predicts subcellular localization of proteins in eukaryotic cells from the N-terminal amino acid sequence
100
Protein Prowler - Subcellular Localisation Predictor
http://bioinf.scmb.uq.edu.au/pprowler_webapp_1-2/
A tool for protein subcellular localization prediction
100
PSLpred - predicts subcellular localization of prokaryotic proteins
http://www.imtech.res.in/raghava/pslpred
A tool for subcellular localization prediction for prokaryotic proteins
100
pTARGET
http://bioinformatics.albany.edu/~ptarget
A server for prediction of protein subcellular localizations in eukaryotic non-plant species
100

Website states that this version of tool is outdated and recommends the use of SherLoc2 (as on 15 Nov 2016)
SherLoc - Predicting Protein Subcellular Localization
http://abi.inf.uni-tuebingen.de/Services/SherLoc
A tool for protein subcellular localization prediction
100

Website states that this version of tool is outdated and recommends the use of MultiLoc2 (as on 9 Feb 2015)
Virus-PLoc
http://www.csbio.sjtu.edu.cn/bioinf/virus
A tool for predicting subcellular localization of viral proteins within host and virus-infected cells
100
YeastGFP - Yeast GFP Fusion Localization Database
http://yeastgfp.yeastgenome.org
A database for Yeast GFP protein localization
100
YLoc - Interpretable Subcellular Localization Prediction
www.multiloc.org/Yloc
A tool for subcellular localization prediction of Yeast proteins
100
YPL.db - Yeast Protein Localization Database
http://ypl.uni-graz.at
A database for subcellular localizations of Yeast proteins
100
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