Home   |  About Startbioinfo | Other web-portals 

Categories of resources

Suggested Readings
 
 
Total resources - 5
A comparative account of gene expression resources, feature-validations and application-based categorizations : SAGE
Resources Important features / utilities*CitationsYear of publicationRank by usage frequency Click to Edit / Add comments
GEO - Gene Expression Omnibus
http://www.ncbi.nlm.nih.gov/geo
A public genomics data repository that supports MIAME-compliant data submissions. Sequence- and array-based data are accepted. It archives and freely distributes microarray, next-generation sequencing, and other forms of high-throughput data. It provides various web-interfaces and applications to query and download the data in GEO.
Edgar R, Domrachev M, Lash AE. Gene Expression Omnibus: NCBI gene expression and hybridization array data repository. Nucleic Acids Res. 2002 Jan 1;30 (1):207-10. PubMed PMID: 11752295; PubMed Central PMCID: PMC99122.
2002
1
GeneCards
http://www.genecards.org
A human gene compendium that provides gene related information such as function, pathways, expression and interactions for all known and predicted human genes.
Rebhan M, Chalifa-Caspi V, Prilusky J, Lancet D. GeneCards: integrating information about genes, proteins and diseases. Trends Genet. 1997 Apr;13(4):163. PubMed PMID: 9097728.
1997
97
Note as per the resource: "The service is provided free to academic non-profit institutions. All other users require a Commercial License from XenneX, Inc. Unauthorized usage of this service is in breach of the terms and conditions of this web site, and may cause the user to incur fees for usage".
GermSAGE
http://germsage.nichd.nih.gov
A database containing SAGE (Serial Analysis of Gene Expression) data representing major stages in mouse male germ cell development. It includes three germ cell stages in spermatogenesis (type A spermatogonia, pachytene spermatocytes and round spermatids).
Lee TL, Cheung HH, Claus J, Sastry C, Singh S, Vu L, Rennert O, Chan WY. GermSAGE: a comprehensive SAGE database for transcript discovery on male germ cell development. Nucleic Acids Res. 2009 Jan;37(Database issue):D891-7. Epub 2008 Oct 2. PubMed PMID: 18832368; PubMed Central PMCID: PMC2686471.
2008
100
TiProD - Tissue specific Promoter Database
http://tiprod.bioinf.med.uni-goettingen.de
A database that retrieves promoter sequences according to their tissue-specificity or other functional groupings. TiPROD uses the CGAP (Cancer Genome Anatomy Project) data and calculates tissue-specific gene expression for healthy tissues and assigns these tissue specificity to their corresponding regulatory regions based on EPD, DBTSS, and Ensembl annotation. Gene Ontology terms or ID can also be queried, other than UniGene ID.
Chen X, Wu JM, Hornischer K, Kel A, Wingender E. TiProD: the Tissue-specific Promoter Database. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D104-7. PubMed PMID: 16381824; PubMed Central PMCID: PMC1347475.
2006
100
CIBEX
http://cibex.nig.ac.jp
A public repository for a wide range of gene expression high-throughput experimental data, including microarray-based experiments, SAGE, and mass spectrometry proteomic data. It is aimed at storing MIAME-compliant microarray data.
Ikeo K, Ishi-i J, Tamura T, Gojobori T, Tateno Y. CIBEX: center for information biology gene expression database. C R Biol. 2003 Oct-Nov;326(10-11):1079-82. PubMed PMID: 14744116.
2003
100
 
Disclaimer
Grow and let grow!
copyright © shodhaka life sciences private limited; all rights reserved

Internet Coupons
xanga traffic