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A comparative account of microRNA resources, feature-validations and application-based categorizations : SPECIES: chicken
Resources Important features / utilities*CitationsYear of publicationRank by usage frequency Click to Edit / Add comments
miRBase
http://www.mirbase.org/
A major microRNA repository comprising of microRNA sequences and annotation obtained from published literature wherein both precursor and mature sequences can be retrieved from the database.
Kozomara A, Griffiths-Jones S. miRBase: integrating microRNA annotation and deep-sequencing data. Nucleic Acids Res. 2011 Jan;39(Database issue):D152-7. Epub 2010 Oct 30. PubMed PMID: 21037258 Griffiths-Jones S, Saini HK, van Dongen S, Enright AJ. miRBase: tools for microRNA genomics. Nucleic Acids Res. 2008 Jan;36(Database issue):D154-8. Epub 2007 Nov 8. PubMed PMID: 17991681
2011
66
miRNA_Targets
http://mamsap.it.deakin.edu.au/mirna_targets/.
miRNA_Targets database provide researchers a query platform to investigate miRNA interactions in non-coding and coding regions of RNA and promote research activity on neglected 5? and coding regions of mRNA.
Kumar A, Wong AK, Tizard ML, Moore RJ, Lefèvre C.miRNA Targets:A database for miRNA target predictions in coding and non-coding regions of mRNAs.Genomics. 2012 Dec;100(6):352-6. doi: 10.1016/j.ygeno.2012.08.006. PMID: 22940442.
2012
76
miRDB
http://mirdb.org
Database on predicted microRNA targets and functional annotations of especially mature microRNA in animals.
Wang X. miRDB: a microRNA target prediction and functional annotation database with a wiki interface. RNA. 2008 Jun;14(6):1012-7. Epub 2008 Apr 21. PubMed PMID: 18426918
2008
97
Dataset downloadable
APADB
http://tools.genxpro.net/apadb/.
Müller S, Rycak L, Afonso-Grunz F, Winter P, Zawada AM, Damrath E,Scheider J, Schmäh J, Koch I, Kahl G, Rotter B.APADB: A database for alternative polyadenylation and microRNA regulation events. Database (Oxford). 2014 Jul 22;2014. pii: bau076. doi: 10.1093/database/bau076. PMID: 25052703.
2014
100
EpimiR
http://bioinfo.hrbmu.edu.cn/EpimiR/. Go to: Introduction
EpimiR provides a fairly comprehensive repository about the mutual regulation between epigenetic modifications and miRNAs, which will promote the research on the regulatory mechanism of epigenetics and miRNA
Dai E, Yu X, Zhang Y, Meng F, Wang S, Liu X, Liu D, Wang J, Li X, Jiang W.EpimiR: A database of curated mutual regulation between miRNAs and epigenetic modifications.Database (Oxford). 2014 Mar 28;2014:bau023. doi: 10.1093/database/bau023.PMID: 24682734
2014
100
miRHrt
http://sysbio.suda.edu.cn/mirhrt/
Database of microRNA regulating heart development.
Liu G, Ding M, Chen J, Huang J, Wang H, Jing Q, Shen B. Computational analysis of microRNA function in heart development. Acta Biochim Biophys Sin (Shanghai). 2010 Sep;42(9):662-70. Epub 2010 Aug 17. PubMed PMID: 20716610.
2010
100
Dataset downloadable. On querying each section, no results were obtained and the following message was displayed:"Can't connect to MySQL server "(30-3-12, 7-4-12, 22-4-12, 24-4-12,29-6-12 , 18-7-12 ).
miRmap web
http://mirmap.ezlab.org.
Vejnar CE, Blum M, Zdobnov EM.Comprehensive microRNA target prediction online.Nucleic Acids Res. 2013 Jul;41(Web Server issue):W165-8. doi: 10.1093/nar/gkt430.PMID: 23716633
2013
100
miRNEST
http://mirnest.amu.edu.pl
Comprehensive database on animal, plant and virus microRNA including details on species that are of importance in medical and agricultural research.
Szczesniak MW, Deorowicz S, Gapski J, Kaczynski L, Makalowska I. miRNEST database: an integrative approach in microRNA search and annotation. Nucleic Acids Res. 2012 Jan;40(Database issue):D198-204. Epub 2011 Dec 1. PubMed PMID: 22135287; PubMed Central PMCID: PMC3245016.
2012
100
miRSponge
http://www.bio-bigdata.net/miRSponge
miRSponge, a manually curated database, which aims at providing an experimentally supported resource for microRNA (miRNA) sponges.
Wang P, Zhi H, Zhang Y, Liu Y, Zhang J, Gao Y, Guo M, Ning S, Li X.miRSponge: a manually curated database for experimentally supported miRNA sponges and ceRNAs.Sci Rep. 2016 Mar 24;6:23700. doi: 10.1038/srep23700.PMID: 26424084.
2016
100
 
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