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A comparative account of pathways, feature-validations and application-based categorizations : Pathways in pathogens
Resources Important features / utilities*CitationsYear of publicationRank by usage frequency Click to Edit / Add comments
LeishCyc - biochemical pathways database for Leishmania major
http://www.leishcyc.org
A biochemical pathways database for Leishmania major. It describes Leishmania major genes, gene products, metabolites, their relationships and biochemical organization into metabolic pathways. It serves as a tool for analysis, interpretation, and visualization of Leishmania Omics data (transcriptomics, proteomics, metabolomics) in the context of metabolic pathways.
Doyle MA, MacRae JI, De Souza DP, Saunders EC, McConville MJ, Likic VA. LeishCyc: a biochemical pathways database for Leishmania major. BMC Syst Biol. 2009 Jun 5;3:57. PubMed PMID: 19497128; PubMed Central PMCID: PMC2700086.
2009
100
NMPDR - National Microbial Pathogen Data Resource
http://www.nmpdr.org
Microbial pathogen data resource with emphasis on food-borne pathogens.
McNeil LK, Reich C, Aziz RK, Bartels D, Cohoon M, Disz T, Edwards RA, Gerdes S, Hwang K, Kubal M, Margaryan GR, Meyer F, Mihalo W, Olsen GJ, Olson R, Osterman A, Paarmann D, Paczian T, Parrello B, Pusch GD, Rodionov DA, Shi X, Vassieva O, Vonstein V, Zagnitko O, Xia F, Zinner J, Overbeek R, Stevens R. The National Microbial Pathogen Database Resource (NMPDR): a genomics platform based on subsystem annotation. Nucleic Acids Res. 2007 Jan;35(Database issue):D347-53.Epub 2006 Dec 1. PubMed PMID: 17145713; PubMed Central PMCID: PMC1751540.
2007
100
PathoPlant
http://www.pathoplant.de
Plant pathogenesis pathways and interactions.
Bülow L, Schindler M, Choi C, Hehl R. PathoPlant: a database on plant-pathogen interactions. In Silico Biol. 2004;4(4):529-36. PubMed PMID: 15752070.
2004
100
PATRIC - PathoSystems Resource Integration Center
http://patric.vbi.vt.edu
Pathway resources for bacteria and viruses.
Snyder EE, Kampanya N, Lu J, Nordberg EK, Karur HR, Shukla M, Soneja J, Tian Y, Xue T, Yoo H, Zhang F, Dharmanolla C, Dongre NV, Gillespie JJ, Hamelius J, Hance M, Huntington KI, Jukneliene D, Koziski J, Mackasmiel L, Mane SP, Nguyen V, Purkayastha A, Shallom J, Yu G, Guo Y, Gabbard J, Hix D, Azad AF, Baker SC, Boyle SM, Khudyakov Y, Meng XJ, Rupprecht C, Vinje J, Crasta OR, Czar MJ, Dickerman A, Eckart JD, Kenyon R, Will R, Setubal JC, Sobral BW. PATRIC: the VBI PathoSystems Resource Integration Center. Nucleic Acids Res. 2007 Jan;35(Database issue):D401-6. Epub 2006 Nov 16. PubMed PMID: 17142235; PubMed Central PMCID: PMC1669763.
2006
100
Protein Lounge
http://www.proteinlounge.com
Contains curated pathways for many different organisms.
Not available
Not available
100
VirHostNet
http://pbildb1.univ-lyon1.fr/virhostnet/login.php
Knowledgebase system for curation, analysis and management of virus-host molecular interactions.
Navratil V, de Chassey B, Meyniel L, Delmotte S, Gautier C, André P, LotteauV, Rabourdin-Combe C. VirHostNet: a knowledge base for the management and the analysis of proteome-wide virus-host interaction networks. Nucleic Acids Res.2009 Jan ; 37(Database issue):D661-8. Epub 2008 Nov 4. PubMed PMID: 18984613;PubMed Central PMCID: PMC2686459.
2009
100
 
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