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A comparative account of protein-protein interaction resources, feature-validations and application-based categorizations : PPIs specific to microbes
Resources Important features / utilities*CitationsYear of publicationRank by usage frequency Click to Edit / Add comments
Bacteriome.org - Bacterial protein interaction database
http://www.bacteriome.org
A web-resource that provides domain interactions along with PPIs. Provides protein interactions along with the complexes involved. Protein interactions specific to a biological process (e.g., apoptosis, cell cycle) can also be obtained. Provides interactions along with their structural relationships.
Su C, Peregrin-Alvarez JM, Butland G, Phanse S, Fong V, Emili A, Parkinson J. Bacteriome.org--an integrated protein interaction database for E. coli. Nucleic Acids Res. 2008 Jan;36(Database issue):D632-6. Epub 2007 Oct 16. PubMed PMID: 17942431; PubMed Central PMCID: PMC2238847.
2007
100
MiPPI - Microbial Protein-Protein Interactions
http://mippi.ornl.gov
A resource specific to microbial (R. palustris & S. oneidensis) protein interactions derived from experimental data.
Not available
Not available
100
MPIDB - Microbial Protein Interaction DataBase
http://www.jcvi.org/mpidb
A database specific to bacterial PPIs. Gets similar protein interactions among species.
Goll J, Rajagopala SV, Shiau SC, Wu H, Lamb BT, Uetz P. MPIDB: the microbial protein interaction database. Bioinformatics. 2008 Aug 1;24(15):1743-4. Epub 2008 Jun 13. PubMed PMID: 18556668; PubMed Central PMCID: PMC2638870.
2008
100
Plasmod-PPI/PPPI - Plasmodium Protein-Protein Interactions
http://miaja.tic.udc.es/Bio-AIMS/PlasmodPPI.php
A database specific to Plasmodium PPIs.
Yamilet Rodriguez-Soca, Cristian R. Munteanu, Julian Dorado, Juan Rabuñal, Alejandro Pazos and Humberto González-Díaz, Plasmod-PPI: a web-server predicting complex biopolymer targets in Plasmodium with entropy measures of protein-protein interactions, Polymer 51(1), 264-273 (2010)
2010
100
SPiD
http://genome.jouy.inra.fr/spid
A database specific to Bacillus subtilis PPIs. Provides the interaction sites for a given protein.
Hoebeke M, Chiapello H, Noirot P, Bessières P. SPiD: a subtilis protein interaction database. Bioinformatics. 2001 Dec;17(12):1209-12. PubMed PMID: 11751229.
2001
100
YPD - Yeast Proteome Database
http://www.proteome.com/YPDhome.html
A manually curated database from PubMed for yeast proteome. Contains other information related to yeast proteins in additon to interaction.
Garrels JI. YPD-A database for the proteins of Saccharomyces cerevisiae. Nucleic Acids Res. 1996 Jan 1;24(1):46-9. PubMed PMID: 8594598; PubMed Central PMCID: PMC145596.
1996
100
 
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