Home   |  About Startbioinfo   |  Other web-portals  

Categories of resources
 
 
Created on: 09-Sep-2012   Last updated on: 10-May-2013 |  How to cite this?
Total resources - 24
A compilation of lipid resources
Sravanthi Davuluri, Akhilesh Bajpai and Vishalavani Nidagundi (Correspondence: Acharya KK, kshitish@ibab.ac.in)
 Click here for additional comparative study/note

Resources

Important features / utilities*CitationsYear of publicationRank by usage frequency Add comments
LIQUID
http://github.com/PNNL-Comp-Mass-Spec/LIQUID.
It is an open source software. Helps in processing and visualization of data LC-MS/MS-based lipidomics data
Jennifer E. Kyle Kevin L. Crowell Cameron P. Casey Grant M. Fujimoto Sangtae Kim Sydney E. Dautel Richard D. Smith Samuel H. Payne Thomas O. Metz; LIQUID: an-open source software for identifying lipids in LC-MS/MS-based lipidomics data; Bioinformatics. 2017 Jan 31. doi: 10.1093/bioinformatics/btx046; PMID: 28158427
2017
50
Very large database of lipids
http://www.clinicaltrials.gov
Provides information about lipids
Elshazly MB, Quispe R, Michos ED, Sniderman AD, Toth PP, Banach M, Kulkarni KR, Coresh J, Blumenthal RS, Jones SR, Martin SS; Patient-Level Discordance in Population Percentiles of the Total Cholesterol to High-Density Lipoprotein Cholesterol Ratio in Comparison With Low-Density Lipoprotein Cholesterol and Non-High-Density Lipoprotein Cholesterol: The Very Large Database of Lipids Study (VLDL-2B);Circulation. 2015 Aug 25;132(8):667-76. doi: 10.1161/CIRCULATIONAHA.115.016163. Epub 2015 Jul 2; PMID: 25604238
2015
50
Lipidomics Gateway
http://www.lipidmaps.org
Provides detailed information about lipids as well as overview of developments in lipid research.
Not available
Not available
99
LMSD - LIPID MAPS Structure Database
http://www.lipidmaps.org/
Provides information about the structure and annotations of biologically relevant lipids.
Sud M, Fahy E, Cotter D, Brown A, Dennis EA, Glass CK, Merrill AH Jr, Murphy RC, Raetz CR, Russell DW, Subramaniam S. LMSD: LIPID MAPS structure database. Nucleic Acids Res. 2007 Jan;35(Database issue):D527-32. Epub 2006 Nov 10. PubMed PMID: 17098933; PubMed Central PMCID: PMC1669719.
2007
99
CYBERLIPID CENTER
http://www.cyberlipid.org
Provides description of different fats and oils.
Not available
Not available
100
Lipid Bank
http://lipidbank.jp
Provides information about the natural lipids.
Yasugi E, Seyama Y. [Lipid database LipidBank and international collaboration]. Tanpakushitsu Kakusan Koso. 2007 Sep;52(11):1357-62. Review. Japanese. PubMed PMID: 17867291.
2007
100
Lipid Bilayer Membranes for RasMol
http://www.umass.edu/microbio/rasmol/bilayers.htm
Provides lipid bilayer membrane information.
Not available
Not available
100
LIPIDAG
http://www.lipidag.tcd.ie
Provides lipid miscibility and associated information
Not available
Not available
100
LIPIDAT
http://www.lipidat.tcd.ie
Provides information about the known mesomorphic and olymorphic phase transition temperatures and the enthalpy changes of the synthetic and biologically-derived lipids.
Caffrey M, Hogan J. LIPIDAT: a database of lipid phase transition temperatures and enthalpy changes. DMPC data subset analysis. Chem Phys Lipids. 1992 Mar;61(1):1-109. PubMed PMID: 1315624.
1992
100
Lipids Online
http://www.lipidsonline.org
An online resource, which provides reliable information and educational tools like, slide library, virtual meetings, commentaries on research.
Not available
Not available
100
LMPD - LIPID MAPS Proteome Database
http://www.lipidmaps.org/data/proteome/index.cgi
Provides information about proteins and genes, which are associated with all the lipids and also provides the list of human proteins and mouse proteins.
Cotter D, Maer A, Guda C, Saunders B, Subramaniam S. LMPD: LIPID MAPS proteome database. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D507-10. PubMed PMID: 16381922; PubMed Central PMCID: PMC1347484.
2006
100
LOX-DB - LipOXygenases DataBase
http://www.glycosciences.de/spec/lox-db/
Provides information about the sequence, structure and function of mammalian members of lipoxygenases. 
Lütteke T, Krieg P, Fürstenberger G, von der Lieth CW. LOX-DB-- database on lipoxygenases. Bioinformatics. 2003 Dec 12;19(18):2482-3. PubMed PMID: 14668238.
2003
100
THE LIPID LIBRARY
http://lipidlibrary.aocs.org
Provides information about the lipids like, lipid chemistry, biology, technology & analysis.
Not available
Not available
100
ANTISTAPHYBASE
 https://www.antistaphybase.com/
Provides information on antimicrobial peptides and essential oils. Freely available.
Abdelmajid ZouhirEmail authorMalek TaiebMohamed Ashraf LamineAmmar CherifTaoufik JridiBasma MahjoubiSarra MbarekIsmail FlissAdel NefziKhaled SebeiJeannette Ben Hamida; ANTISTAPHYBASE: database of antimicrobial peptides (AMPs) and essential oils (EOs) against methicillin-resistant Staphylococcus aureus (MRSA) and Staphylococcus aureus; Arch Microbiol. 2017 Mar;199(2):215-222. doi: 10.1007/s00203-016-1293-6. Epub 2016 Sep 26; PMID: 27671474
2017
100
OGDD (Olive Genetic Diversity Database)
 http://www.bioinfo-cbs.org/ogdd/
Provides information about unknown olive or virgin olive oil cultivars based on their microsatellite allele size(s). Additional morphological and chemical information is also provided
Ben Ayed R, Ben Hassen H, Ennouri K, Ben Marzoug R, Rebai A; OGDD (Olive Genetic Diversity Database): a microsatellite markers' genotypes database of worldwide olive trees for cultivar identification and virgin olive oil traceability.Database (Oxford). 2016 Jan 30;2016. pii: bav090. doi: 10.1093/database/bav090; PMID: 26827236
2016
100
ARALIPmutantDB
http://aralip.plantbiology.msu.edu
This database provides information about mutated Arabidopsis genes associated with Arabidopsis acyl lipid metabolism
McGlew K, Shaw V, Zhang M, Kim RJ, Yang W, Shorrosh B, Suh MC, Ohlrogge J. An annotated database of Arabidopsis mutants of acyl lipid metabolism.Plant Cell Rep. 2015 Apr;34(4):519-32. doi: 10.1007/s00299-014-1710-8. Epub 2014 Dec 10; PMID: 25487439
2015
100
ocsESTdb
 http://ocri-genomics.org/ocsESTdb/
Provides expressed sequence tag (EST) information on seeds of large-scale oil crops like: sesame (Sesamum indicum), peanut (Arachis hypogaea), rapeseed (Brassica napus) and soybean (Glycine max)
Tao Ke, Jingyin Yu, Caihua Dong, Han Mao, Wei Hua, and Shengyi Liu; ocsESTdb: a database of oil crop seed EST sequences for comparative analysis and investigation of a global metabolic network and oil accumulation metabolism. BMC Plant Biol. 2015 Jan 21;15:19. doi: 10.1186/s12870-014-0399-8; PMID: 25604238
2015
100
RaftProt
http://lipid-raft-database.di.uq.edu.au/
This database provides information about mammalian lipid raft-associated proteins
Shah A, Chen D, Boda AR, Foster LJ, Davis MJ, Hill MM; RaftProt: mammalian lipid raft proteome database; Nucleic Acids Res. 2015 Jan;43(Database issue):D335-8. doi: 10.1093/nar/gku1131. Epub 2014 Nov 11;PMID: 24623704
2015
100
EssOilDB
http://nipgr.res.in/Essoildb/
Database of plant essential oils
Kumari S, Pundhir S, Priya P, Jeena G, Punetha A, Chawla K, Firdos Jafaree Z1, Mondal S, Yadav G; EssOilDB: a database of essential oils reflecting terpene composition and variability in the plant kingdom.; Database (Oxford). 2014 Dec 22;2014:bau120. doi: 10.1093/database/bau120; PMID: 25534749
2014
100
LipidMiner
http://sourceforge.net/projects/lipidminer/.
It is a freely available software for the identifying and quantifying lipids automatically from multiple liquid chromatography-mass spectrometry data files.
Da Meng, Qibin Zhang,Xiaoli Gao, Si Wu, and Guang Lin. LipidMiner: a software for automated identification and quantification of lipids from multiple liquid chromatography-mass spectrometry data files. Rapid Commun Mass Spectrom. 2014 Apr 30;28(8):981-5. doi: 10.1002/rcm.6865. PMID: 24623704 PMCID: PMC4000603
2014
100
LipidGO
http://compbio.ddns.comp.nus.edu.sg/%7elipidgo/index.php
This database gives information about lipid related gene ontology[GO] terms
Fan M, Low HS, Zhou H, Wenk MR, Wong L; LipidGO: database for lipid-related GO terms and applications. Bioinformatics. 2014 Apr 1;30(7):1043-4. doi: 10.1093/bioinformatics/btt689. Epub 2013 Dec 1; PMID: 24297518
2014
100
LipidHome
http://www.ebi.ac.uk/apweiler-srv/lipidhome
This database provides information about theoritical lipid molecules. It is an equivalent resource of Uniprot in the field of lipidomics
Foster JM1, Moreno P, Fabregat A, Hermjakob H, Steinbeck C, Apweiler R, Wakelam MJ, Vizcaíno JA; LipidHome: a database of theoretical lipids optimized for high throughput mass spectrometry lipidomics. PLoS One. 2013 May 7;8(5):e61951. doi: 10.1371/journal.pone.0061951; PMID: 23667450
2013
100
In silico identification software (ISIS)
 http://omics.pnl.gov/
This algorithmin generates in silico spectra of lipids for the sole purpose of structural identification.
Kangas LJ, Metz TO, Isaac G, Schrom BT, Ginovska-Pangovska B, Wang L, Tan L, Lewis RR, Miller JH. In silico identification software (ISIS): a machine learning approach to tandem mass spectral identification of lipids. Bioinformatics. 2012 Jul 1;28(13):1705-13. doi: 10.1093/bioinformatics/bts194. Epub 2012 May 15; PMID: 22592377
2012
100
ExoCarta
http://www.exocarta.org
It is a database of exosomal proteins, RNA and lipids
Suresh Mathivanan,1, Cassie J. Fahner, Gavin E. Reid, and Richard J. Simpson;ExoCarta 2012: database of exosomal proteins, RNA and lipids; Nucleic Acids Res. 2012 Jan;40(Database issue):D1241-4. doi: 10.1093/nar/gkr828. Epub 2011 Oct 11. PMID: 21989406
2012
100
Grow and let grow!
copyright © shodhaka life sciences private limited; all rights reserved

real time tracking